rs579224070 SNP Detail

Summary

• ID
  rs579224070
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:86983242 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACCTA TCTATCTATC TATCTATCTA
  T
  CTATCTATCT ATCTATCTAT CTATC                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BR/cdJ	C57L/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	KK/HlJ	NOD/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi5/Ianm	RIIIS/J	SJL/J	SM/J	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss916906413	MGP_WTSI_4_87065005	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	AKR/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BR/cdJ	C57L/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	KK/HlJ	NOD/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi5/Ianm	RIIIS/J	SJL/J	SM/J	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs579224070					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss916906413	MGP_WTSI_4_87065005	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:86983242 () rs orientation: forward

Symbol	Name	Function Class
Rr594860	regulatory region 594860	1730 bp distal
Rr594861	regulatory region 594861	345 bp proximal
Slc24a2	solute carrier family 24 (sodium/potassium/calcium exchanger), member 2	Intron