rs578982979 SNP Detail

Summary

• ID
  rs578982979
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr18:65519552 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACACT CACACATTAC ACACATACAC
  W
  CACACATACA CACACTCACA CATAC                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	LP/J	QSi3/Ianm
ss924023852	MGP_WTSI_18_65386481	EVA_MGPV3	EVA_MGPV3	f	SNP	T	A	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	LP/J	QSi3/Ianm
rs578982979					SNP	T	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss924023852	MGP_WTSI_18_65386481	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:65519552 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Alpk2	alpha-kinase 2			Intron
				Noncoding-Transcript-Variant
D18Mit182	DNA segment, Chr 18, Massachusetts Institute of Technology 182			1165 bp distal
Rr539524	regulatory region 539524			within coordinates
Tssr151600	transcription start site region 151600			438 bp downstream
Tssr151601	transcription start site region 151601			382 bp downstream