rs578876557 SNP Detail

Summary

• ID
  rs578876557
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:147897641 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCCCC CACCCACTCC CCCACCCACC
  Y
  ACTCCCACTT CTTGGCCCTG GCATT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	CZECHII/EiJ	FVB/NJ	I/LnJ	JF1/MsJ	MOLF/EiJ	RIIIS/J	SEA/GnJ	SPRET/EiJ
ss917139551	MGP_WTSI_4_147813184	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	CZECHII/EiJ	FVB/NJ	I/LnJ	JF1/MsJ	MOLF/EiJ	RIIIS/J	SEA/GnJ	SPRET/EiJ
rs578876557					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss917139551	MGP_WTSI_4_147813184	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:147897641 () rs orientation: forward

Symbol	Name	Function Class
Rr367778	regulatory region 367778	136 bp upstream
Rr398847	regulatory region 398847	1326 bp downstream
Rr398848	regulatory region 398848	1321 bp upstream
Rr604504	regulatory region 604504	1420 bp proximal
Rr604505	regulatory region 604505	1566 bp proximal
Tssr44549	transcription start site region 44549	1487 bp downstream