rs578712794 SNP Detail

Summary

• ID
  rs578712794
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:118996946 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCTCT CTCTGTCTCT CTCTGTCTCT
  S
  TCTCTCTGTC TCTCTGTCTC TGTCT                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	PWK/PhJ	QSi3/Ianm	RF/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J
ss915658401	MGP_WTSI_2_119166465	EVA_MGPV3	EVA_MGPV3	f	SNP	G	C	G	G	G	G	G	G	G	G	G	C	G	C	G	G	G	C	G	G	G	G	C	G	G	C	G	G	C	G	G	C	G	G	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	PWK/PhJ	QSi3/Ianm	RF/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J
rs578712794					SNP	G	C	G	G	G	G	G	G	G	G	G	C	G	C	G	G	G	C	G	G	G	G	C	G	G	C	G	G	C	G	G	C	G	G	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss915658401	MGP_WTSI_2_119166465	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:118996946 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12107	CpG island 12107	857 bp proximal
Gchfr	GTP cyclohydrolase I feedback regulator	1323 bp upstream
Rr563425	regulatory region 563425	851 bp distal
Rr563426	regulatory region 563426	818 bp proximal
Rr563427	regulatory region 563427	1150 bp proximal
Rr563428	regulatory region 563428	1319 bp proximal
Tssr19604	transcription start site region 19604	1293 bp upstream
Tssr19605	transcription start site region 19605	1317 bp upstream