rs578565849 SNP Detail

Summary

• ID
  rs578565849
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:144680331 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATAGA TAGATAGATA GATAGATAGA
  Y
  AGATAGATAG ATAGATAGTC AAAGA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	CE/J	FVB/NJ	I/LnJ	JF1/MsJ	LG/J	MA/MyJ	NZO/HlLtJ	RIIIS/J	SJL/J	SPRET/EiJ	WSB/EiJ
ss917130540	MGP_WTSI_4_144953761	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	CE/J	FVB/NJ	I/LnJ	JF1/MsJ	LG/J	MA/MyJ	NZO/HlLtJ	RIIIS/J	SJL/J	SPRET/EiJ	WSB/EiJ
rs578565849					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss917130540	MGP_WTSI_4_144953761	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:144680331 () rs orientation: forward

Symbol	Name	Function Class
Gm42344	predicted gene, 42344	within coordinates
Gm69556	predicted gene, 69556	within coordinates
Rr604272	regulatory region 604272	1566 bp distal
Rr604273	regulatory region 604273	107 bp distal
Rr604274	regulatory region 604274	1920 bp proximal