rs578393824 SNP Detail

Summary

• ID
  rs578393824
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:72504098 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGGGA GACAACTACA AATAATTCCC
  Y
  CCCCCCCCCC CCCCCCAGTG GTATG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57L/J	CZECHII/EiJ	DBA/1J	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	PWK/PhJ	QSi3/Ianm	RF/J	SEA/GnJ	SM/J	WSB/EiJ
ss915485758	MGP_WTSI_2_72673754	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57L/J	CZECHII/EiJ	DBA/1J	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	PWK/PhJ	QSi3/Ianm	RF/J	SEA/GnJ	SM/J	WSB/EiJ
rs578393824					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss915485758	MGP_WTSI_2_72673754	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:72504098 () rs orientation: forward

Symbol	Name	Function Class
Gm54161	predicted gene, 54161	1192 bp upstream
Gm75261	predicted gene, 75261	1274 bp downstream
Rr559011	regulatory region 559011	within coordinates
Rr559012	regulatory region 559012	339 bp proximal