rs52645962 SNP Detail

Summary

• ID
  rs52645962
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:185246990 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGACCTGACG CCCTTCTTCA
  GGGCTCTCTG AGCACTAAGC ACGAATGTGG TAAACAGACA TACGCTCAGG AAAACAGCCA
  TAAAATAATA ATAATTAGAT AAAATGGAGA GTAAGAGAAA AAGACACCCA GTGCCAACCT
  CTGACATTAC TCCTAAAAAA AAAAGAAAAG AAAAGAAACC AAACCAAAAC ACAAACCAAA
  Y
  TTAAAAAAAA ACAGACAAAA AACCAAAACC ACAAAACAAA ACAAAACAAA ACAAAACCCA
  ACCCATAAAA TAGTTCAAAG GCCGGTTTTA CTTTATTGAG ATTTGGTGAC TTTGACATTG
  CTATGGTTTG AATGTGTAAT GTCCTCCGTG GGCTCCGGTG TCTGCACACT TGGTCCCTGC
  CGGCAGTGCT AGATCAGGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss146434978	ENSMUSSNP5097499	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs52645962					SNP	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:185246990 () rs orientation: forward

Symbol	Name	Function Class
Rr425406	regulatory region 425406	146 bp proximal