rs52633113 SNP Detail

Summary

• ID
  rs52633113
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:135716070 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TGTTCTTTT CTTCGTGCAG CCTTGATGCC
  TCTGCGCCTT CTGGAATTGG TGTAAGAAAT TATGGCTCTC AAAAATGTGG TGCATGGCTG
  GGTGGTGGTG gcggcagtgg cagcagcagc ggcagcagca gtggcagTgg cagcggtggt
  R
  cactcctcta atcccagcac tcaagaggca gaggcaagca gagatctctg tgagttcaag
  gccaacttgt ctatggagca agttccagga cagccagggc tgttgttaca cagagaaatc
  ctgtcttgaa agctaaatta aaATAATAAT                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss145546290	ENSMUSSNP3577497	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
ss319993369	CHEV_1_137684909	CHEVERUD	SCREENING_POP	f	SNP			G	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs52633113					SNP	A	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135716070 () rs orientation: forward

Symbol	Name	Function Class
Rr419276	regulatory region 419276	39 bp distal
Rr419277	regulatory region 419277	332 bp distal
Rr419278	regulatory region 419278	296 bp proximal
Rr419279	regulatory region 419279	615 bp proximal
Rr419280	regulatory region 419280	1402 bp proximal
Rr419281	regulatory region 419281	1673 bp proximal
Tnni1	troponin I, skeletal, slow 1	Intron