rs52631003 SNP Detail

Summary

• ID
  rs52631003
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:51356358 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAACCAGCA GCATAAAAAT
  GTAAAATAAG ACTTAAAATA TATAGTCACT TTTACTTTGT TTTCACATTA CTCTGCACTA
  CAATCCCAGA TATCACATGT GTCATACTAT CTCTTTTTCT GCTGAGGAAT GGAACAGAAA
  CTGAGTCTGT GAGTAAAACT CCTCTGTGAA GAATCAGGAT GTCAGAGTTG CAGTGTGGAA
  Y
  AGCACACATA ACACACACAC ACACATACAC ACACACACAC ATACATACAC ACAGAGAGAG
  AGAGAGAGAG AGAGAGAGAG AGAGAGAGAG AGAGAGAGAG AGAGAGAGGG GGAGAGAGGG
  AGAGAGAGAG AGAGAGAAAT AGTGAGAAAG ACAGAGAATG TGATAAGGGA GAGTGAAAAG
  TAAAATAAAT GTTTAAAATA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ
ss52289271	NES15305186	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ
rs52631003					SNP	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52289271	NES15305186	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:51356358 () rs orientation: forward

Symbol	Name	Function Class
Gm49339	predicted gene, 49339	350 bp upstream
Lilrb4b	leukocyte immunoglobulin-like receptor, subfamily B, member 4B	399 bp upstream
Rr431273	regulatory region 431273	211 bp proximal
Tssr93232	transcription start site region 93232	7 bp downstream
Tssr93233	transcription start site region 93233	551 bp upstream
Tssr93234	transcription start site region 93234	577 bp upstream
Tssr93235	transcription start site region 93235	870 bp upstream
Tssr93236	transcription start site region 93236	1356 bp upstream
Tssr93237	transcription start site region 93237	1395 bp upstream
Tssr93238	transcription start site region 93238	1419 bp upstream
Tssr93239	transcription start site region 93239	1444 bp upstream
Tssr93240	transcription start site region 93240	1461 bp upstream
Tssr93241	transcription start site region 93241	1483 bp upstream
Tssr93242	transcription start site region 93242	1523 bp upstream
Tssr97553	transcription start site region 97553	172 bp downstream