rs52622489 SNP Detail

Summary

• ID
  rs52622489
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:185246992 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      A AATGGAGAGT AAGAGAAAAA GACACCCAGT GCCAACCTCT
  GACATTACTC CTAAAAAAAA AAGAAAAGAA AAGAAACCAA ACCAAAACAC AAACCAAATT
  W
  AAAAAAAAAC AGACAAAAAA CCAAAACCAC AAAACAAAAC AAAACAAAAC AAAACCCAAC
  CCATAAAATA GTTCAAAGGC CGGTTTTACT TTATTGAGAT T                    
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss146434980	ENSMUSSNP5676758	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs52622489					SNP	A	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:185246992 () rs orientation: forward

Symbol	Name	Function Class
Rr425406	regulatory region 425406	144 bp proximal