rs52610033 SNP Detail

Summary

• ID
  rs52610033
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:72322820 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      A AACCCGGACA TGGTGGCGCA CGCCTTTAAT CCCAGCACTC
  GGGAGGCAGA GGCAGGCGGA TTTCTGAGTT CGAGGCCAGC TGGTCTACAA AGTGAATTCC
  W
  GGACAGCCTG GGCTAATAAA AAGAAACCCT GTCTAGAAAA AAACAAAAAA AACAAAACAA
  AATAACAAAA AAAAGTAAAC CCAAAGAAGA TGCACATTCT C                    
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss144651942	ENSMUSSNP7176130	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs52610033					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:72322820 () rs orientation: forward

Symbol	Name	Function Class
Pecr	peroxisomal trans-2-enoyl-CoA reductase	Intron
Rr412794	regulatory region 412794	675 bp distal
Rr412795	regulatory region 412795	588 bp proximal
Rr412796	regulatory region 412796	719 bp proximal
Tmem169	transmembrane protein 169	734 bp upstream
Tssr114	transcription start site region 114	611 bp downstream
Tssr115	transcription start site region 115	627 bp downstream
Tssr116	transcription start site region 116	644 bp downstream
Tssr7298	transcription start site region 7298	706 bp upstream
Tssr12164	transcription start site region 12164	563 bp downstream
Tssr12165	transcription start site region 12165	587 bp downstream