rs52603660 SNP Detail

Summary

• ID
  rs52603660
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr10:39010591 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATGTTCTGG AATTTGCAGC
  GATCCATCTG TCTCTGCATC CCCAGGACTA CCACTATCAT GCCCAGATTA CTTGGGCTTT
  TTAATCAGTA CCATAAATTG CATAGGATCT TCTCATACCG GTCGTGGCTA GTTTCTTTTT
  AAACGTGTTG CTGTAAGTCA CAGGCAGAAG GCACTTGTCA GGAGTTTGGT CTTAAGTTTC
  Y
  CTGATCTTTA GCAGTCTCCT CCTCCTCCTC CTCCTCCTCC TCCTCCTCCT CCTCCTCCTC
  CTCCTCCTCC TGTTGTTGTT GTTGTTGTTG TTGTTTTGAA AGACAGTAGA TGCTATAGAT
  GAAAGCACTA TAAAGTAGGT AAATACATCA AACGACCAAG AATCCCAAGA AATTCCCACT
  TGGAGTACCA GCTGTATAAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52232496	NES15203407	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs52603660					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52232496	NES15203407	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:39010591 () rs orientation: forward

Symbol	Name	Function Class
Fam229b	family with sequence similarity 229, member B	681 bp upstream
Rr429936	regulatory region 429936	758 bp distal
Rr429937	regulatory region 429937	562 bp distal
Tssr92973	transcription start site region 92973	615 bp downstream
Tssr92974	transcription start site region 92974	564 bp downstream
Tssr92975	transcription start site region 92975	529 bp downstream
Tssr97329	transcription start site region 97329	683 bp upstream
Tssr97330	transcription start site region 97330	668 bp upstream
Tube1	tubulin, epsilon 1	Intron