rs52600377 SNP Detail

Summary

• ID
  rs52600377
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:185245313 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCTGTTACT TTTCATCTAT
  CAGTCAACCT GTATCATCTA TCTACCTATC ATCTATCAAT CATTTATCAA TCTATTTCTA
  TTTACCTATC ATCAGTCTGT ATATCTATCA TTTATCAATC ATCTATGATC ATCTATCAAT
  CCATTTCTAT GTACTTATCA TCTGTCTATA TGTTTTGGGA AATATTAAAA AAGTGAAACC
  R
  CACGTTCCTG CGCTTGTGCC TGCACAGTGT TTTCTCGCTG GGCTACTTTT TCGAGCTTGC
  CCCAGCTTGC CCGATTGCTG TATTTCTAGC TCTCATTCGC TTGTCCCTGG AGCCGCTAGT
  TCCCTCTCTA CCACCAGCTC TGACCCACAT TCTAGTAACC AAATGGATCT GCCACCCTTG
  TGGTTTGATA ATACAATTCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss146434864	ENSMUSSNP1293815	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	G
ss320176762	CHEV_1_187336995	CHEVERUD	SCREENING_POP	f	SNP				A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs52600377					SNP	A	G	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:185245313 () rs orientation: forward

Symbol	Name	Function Class
Rr425406	regulatory region 425406	1823 bp proximal