rs52594875 SNP Detail

Summary

• ID
  rs52594875
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr13:77195921 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      G GCTTGCTGCT TCTCAATAGG CTGTCTGGCT TGGCTACAGC
  CGCACGGAGG GAGAAATGTA AGAATCTTAA TATAAACACC ACACACACAC ACACACACAC
  R
  CACACACACA CACACACACA CACACACACA CACACACACA CGCTGAAGAG TCCCTAAGTA
  CCATTTAAAG CTGAACAGCA GCAGCACATA GAATGGCACA G                    
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss144698343	ENSMUSSNP6263581	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs52594875					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:77195921 () rs orientation: forward

Symbol	Name	Function Class
Rr482874	regulatory region 482874	552 bp proximal
Slf1	SMC5-SMC6 complex localization factor 1	Intron
Tssr123272	transcription start site region 123272	384 bp upstream
Tssr123273	transcription start site region 123273	127 bp upstream