rs52590656 SNP Detail

Summary

• ID
  rs52590656
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:144038260 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGGCCCTT TGGACTTGCA
  AACTTTATAT GCCCCAGTAC AGGGGAACGC CAGGGCCAAA AGGGGGAGTG GGTGGGTAGG
  GGATTTGGGG GGTGGGTATG GGGGACTTTT GGGATAGCAT TGGAAATGTA AACGAGGAAA
  ATACCTAATT TAAAAAAAAA AAAAAAAGAA TGCTAAAGAG GAGCCAGGTG TGGTGGCACA
  C
  GCCTTTAATC CCAGCACTCA GGAGGCAGAG ACAGGTGGAT TTCTGAGTTC CAGGCCAACC
  TGGTCTACAA AGTGATTTCC AGGACCCTGT CTCAAAAAAA CAAACAAACA ATCAACAAAA
  AAATGCACCA TAACCTGGTC AGCTATTGGG TAGTCCTCAA CTTCCCTAAG GCCTGGGAAC
  TAGAACTTCC ACCCTATCAT                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J
ss147820571	ENSMUSSNP5262842	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
SNP Consensus Information
SNP					Consensus Type	DBA/2J
rs52590656					SNP	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:144038260 () rs orientation: forward

Symbol	Name	Function Class
Rr377339	regulatory region 377339	710 bp upstream
Rr604223	regulatory region 604223	1389 bp distal
Rr604224	regulatory region 604224	1095 bp distal