rs52585326 SNP Detail

Summary

• ID
  rs52585326
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:135750863 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGACCTCTGC ACACTCATCC
  TGGCATTCTG GCACATATGA ATCTCTCTCT CTCTCTCTCT CTCTCTCTCT CTCTCTCTCT
  CTCTCACACA CACACACACA CACACACACA CACACATTAA ATGGAATATA AGAAAAGAAG
  GGAAACAAGA AAGGAATGAA GAAAGAAAGG AGACAAGTGC TGTCGTGGTG GTGCACGCCT
  K
  TAATCCCAAC ACTCGGGAGG CAGAGGCAGG CAGATTTCTG AGTTCGAGGC CAGCCTGGTC
  TACAGAGTGA ATTCCAGGAC AGCCAGGGCT ATACAGAGAA ACCCTGTGTC GGAAAGAAAG
  AAAGGAAGAA AGAAAGAAAG GAAGGAAGGA AGGAAGAAAG AAAGAAAGAA AGAAAGAAAG
  AAAGAAAGAA AGAAAGAAAG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147556018	ENSMUSSNP371506	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs52585326					SNP	T	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135750863 () rs orientation: forward

Symbol	Name	Function Class
Eloa	elongin A	1903 bp upstream
Gm68304	predicted gene, 68304	within coordinates
Rr398604	regulatory region 398604	1580 bp downstream
Rr602239	regulatory region 602239	1800 bp distal
Rr602240	regulatory region 602240	1541 bp distal
Rr602241	regulatory region 602241	1351 bp distal
Rr602242	regulatory region 602242	1950 bp proximal
Tssr44023	transcription start site region 44023	1887 bp upstream
Tssr44024	transcription start site region 44024	1858 bp upstream
Tssr44025	transcription start site region 44025	1816 bp upstream