rs52582475 SNP Detail

Summary

• ID
  rs52582475
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:67421501 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTTATGATTT TTTTAAAAAT CATATTGGAT TGAAAGAAAA
  TAATCCCTGG TATTTGAAAA TTGGTGAACT TTGTCCGTCT GGGTTTGTTT GTTTGTTTGT
  Y
  TGTTTGTTTT AATAGAGAAT TCTCCCCCCC CCCACCCCCC AATAACGAGG GAGGTTGTCA
  TCAGGGCTCC TCTTTCCTCA AAGAAGAGGA CAAGATCTT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss135258375	ENSMUSSNP5710460	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs52582475					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:67421501 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13247	CpG island 13247	533 bp proximal
Gm40067	predicted gene, 40067	1081 bp upstream
Rarres1	retinoic acid receptor responder (tazarotene induced) 1	Intron
Rr577934	regulatory region 577934	919 bp distal
Rr577935	regulatory region 577935	1144 bp distal
Rr577936	regulatory region 577936	1345 bp proximal
Rr577937	regulatory region 577937	1384 bp proximal
Rr577938	regulatory region 577938	1482 bp proximal
Tssr33502	transcription start site region 33502	1300 bp downstream
Tssr33503	transcription start site region 33503	1319 bp downstream
Tssr33504	transcription start site region 33504	1458 bp downstream
Tssr33505	transcription start site region 33505	1495 bp downstream
Tssr33506	transcription start site region 33506	1536 bp downstream