rs52581152 SNP Detail

Summary

• ID
  rs52581152
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:90758085 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAGAT ATAAAGACTC ATAACCCCCC
  M
  CACACATACT CATAGACATT CTCAT                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss133379602	ENSMUSSNP6339711	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
ss321852710	CHEV_6_90731097	CHEVERUD	SCREENING_POP	f	SNP		A	C
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs52581152					SNP	C	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:90758085 () rs orientation: forward

Symbol	Name	Function Class
E130314K07Rik	RIKEN cDNA E130314K07 gene	within coordinates
Iqsec1	IQ motif and Sec7 domain 1	Intron
Rr1762	regulatory region 1762	within coordinates
Rr634323	regulatory region 634323	1868 bp distal
Tssr62048	transcription start site region 62048	179 bp downstream
Tssr62049	transcription start site region 62049	921 bp downstream
Tssr62050	transcription start site region 62050	934 bp downstream
Tssr62051	transcription start site region 62051	1407 bp downstream