rs52581005 SNP Detail

Summary

• ID
  rs52581005
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:100589834 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAAAC AAACAAAAAA CAAAAAAGGA
  A
  AGAAAGAAAA AGAGCCTGAG GTGTG                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss145542825	ENSMUSSNP386289	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	A
ss322349750	CHEV_7_108089141	CHEVERUD	SCREENING_POP	f	SNP				A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs52581005					SNP	A	A	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:100589834 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi19492	CpG island 19492			1365 bp distal
P2ry6	pyrimidinergic receptor P2Y, G-protein coupled, 6			Intron
				Noncoding-Transcript-Variant
Rr381211	regulatory region 381211			1886 bp upstream
Tssr68182	transcription start site region 68182			1711 bp downstream
Tssr73799	transcription start site region 73799			1808 bp upstream
Tssr73800	transcription start site region 73800			1737 bp upstream
Tssr73801	transcription start site region 73801			1611 bp upstream
Tssr73802	transcription start site region 73802			1578 bp upstream
Tssr73803	transcription start site region 73803			1502 bp upstream
Tssr73804	transcription start site region 73804			1483 bp upstream
Tssr73805	transcription start site region 73805			656 bp upstream