rs52579175 SNP Detail

Summary

• ID
  rs52579175
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:71149661 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGTGAGTT CAAGGCCAGC
  ATGGTCTATT TAGTGAGACA AGACAAAAAA AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA
  AACACACAAC AATTAAACTA ACCATGACTG AAAATAAAAA CTGAAGAAAA AATACTAGAA
  AATACTAATT AAACTAAAAT GAGGAAAAAA CGGAGGAATA CAAAGGCAGG GGAAAACCAT
  M
  CGTACATGGA CTACAAATTC ATCAAGAGAT AGCTGGGCTT GGTGCTGAAA CTGTATAAGG
  TGTAAAGTGA CTAAACAAAG TGACTCGAAA GCAGAGACTA AATGAAAAAC CCAGTTAAAT
  ATGCCCGAAA AGAAGGTATT TAAACACAGG GAGTTTAAAA GTAAACAAAC AAAAAGTTAT
  ACCATAAAAA CAGTAGACAC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss145887961	ENSMUSSNP2998309	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	A	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs52579175					SNP	A	A	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:71149661 () rs orientation: forward

Symbol	Name	Function Class
Gm41610	predicted gene, 41610	578 bp upstream
Rr530331	regulatory region 530331	259 bp proximal
Rr530332	regulatory region 530332	1202 bp proximal
Tgif1	TGFB-induced factor homeobox 1	1539 bp downstream
Tssr149210	transcription start site region 149210	1787 bp upstream
Tssr149211	transcription start site region 149211	1710 bp upstream
Tssr149212	transcription start site region 149212	566 bp upstream
Tssr149213	transcription start site region 149213	158 bp upstream