rs52578080 SNP Detail

Summary

• ID
  rs52578080
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:12626750 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGGGGGGAC CCATGGCTCC
  AGCTGCATAA GAATCAGAAG ATGACCTTAT CTGGCATCAG TGGGAGGGGA GGCCCTTGGT
  CCTGTGAAGG CTTGATGCCG GGGCAGTGAG GTGGGAGTGG GTGGGTGGGT GGGGGAGCAC
  CCTCATAGAA GCAGGGGGAG GGGAAGGGGA TTTGCAGGGG AGAAACCAGG AAAGGCAATA
  W
  CATTTGAAAT GTAAATAAAT AAAATAACCA AAAAAAAAAA TTAAAAAATA AGCCTTCTTG
  TCATTAACTC TATATGAGCT AGTACCTCCA AATAAATACA CAATCCTAAT GTATGAAGTA
  ATGCAGGCAA TCTTAGTTTG TGAACTAATA CTGACAATGG AGTCTCAAAA CAATTTTTCA
  GTTGTAAACT GAATTCTGGG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J	MSM/Ms
ss146023313	ENSMUSSNP6789536	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	DBA/2J	MSM/Ms
rs52578080					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:12626750 () rs orientation: forward

Symbol	Name	Function Class
Gm37985	predicted gene, 37985	within coordinates
Rr589092	regulatory region 589092	344 bp proximal
Rr589093	regulatory region 589093	1743 bp proximal