rs52576548 SNP Detail

Summary

• ID
  rs52576548
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:71699192 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAGGG AGATGAGCAG TGCTGTGCTC
  R
  ATCAAGCAGA AGGATCTGGA GCTCA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss146751480	ENSMUSSNP6402439	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	A
ss320340946	CHEV_2_71706905	CHEVERUD	SCREENING_POP	f	SNP				G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs52576548					SNP	A	G	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:71699192 () rs orientation: forward

Symbol	Name	Function Class
Gm74965	predicted gene, 74965	1296 bp upstream
Gm75575	predicted gene, 75575	within coordinates
Rr370575	regulatory region 370575	27 bp downstream
Rr558853	regulatory region 558853	1307 bp distal
Rr558854	regulatory region 558854	881 bp distal
Tssr18293	transcription start site region 18293	1089 bp downstream
Tssr18294	transcription start site region 18294	335 bp downstream
Tssr18295	transcription start site region 18295	322 bp downstream
Tssr24499	transcription start site region 24499	1264 bp upstream
Tssr24500	transcription start site region 24500	522 bp upstream