rs52576190 SNP Detail

Summary

• ID
  rs52576190
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:141235574 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      C AGCCAGGGCT ATACAGAGAG ACCCTGTCTC AAAAAACCAA
  AAACAAACAA ACAAACAAAC AAAAAAAAAC CACCAAAAAA AAAAAACAAA AAACAAAAAA
  M
  AAAAAAACCC AAAAACTCTT ACTTGGTTAC TTGGGACTGG AGAGATGGCT CAGTGGTTAA
  GAGCACTGAC TGCTCTTCCA AAGGTCCTGA GTTCAATTCC C                    
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147739764	ENSMUSSNP5355979	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs52576190					SNP	A	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141235574 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr603781	regulatory region 603781			942 bp distal
Rr603782	regulatory region 603782			1132 bp distal
Rr603783	regulatory region 603783			859 bp distal
Spen	spen family transcription repressor			Intron
				Noncoding-Transcript-Variant