rs52574008 SNP Detail

Summary

• ID
  rs52574008
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:81525667 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CAACTAGTTA CAATTTGTCT AAAGTTAATT CTCTTATTTT
  AAATGGGAAT AGGAATTAGC ATTTTTATCT TTGAAAATAT TTCATGTTTT TGCTTTTTTG
  G
  TTTTTTTTTT TTTTGTCAAG CTGTTAATTT GTCTTTTCCT TTTTTTTTTA CACAGATGCT
  GGCATACATG TTCTATTCCG TCCCTTACTT TGTGATTGC                       
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss145165522	ENSMUSSNP751236	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs52574008					SNP	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:81525667 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm45867	predicted gene 45867			within coordinates
Rr650221	regulatory region 650221			980 bp distal
Tm6sf1	transmembrane 6 superfamily member 1			Intron
				Noncoding-Transcript-Variant