rs52572574 SNP Detail

Summary

• ID
  rs52572574
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:147514889 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      A ATCTCAAAAT AAATGACTAA ATTAGTTAAT CAATAAAAAC
  TAAAATAAAT AAATTATAAA TATGGTTAAT CTAAGTTCTC AGTGTCCTAC ACTAGTATAG
  C
  ATATGCTACC ATTCCTGGAT AGAAGTGAAT GGTTACTCAC TTCAGATAGA GAGCTAATGA
  CAGAACAAAC TGAAGATGTC ACCAAAATTT AACTTGGTAA A                    
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J
ss147959731	ENSMUSSNP4583098	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
SNP Consensus Information
SNP					Consensus Type	A/J
rs52572574					SNP	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:147514889 () rs orientation: forward

Symbol	Name	Function Class
Rr398814	regulatory region 398814	1362 bp downstream
Rr398815	regulatory region 398815	921 bp downstream
Rr398816	regulatory region 398816	15 bp downstream
Rr398817	regulatory region 398817	557 bp upstream
Rr604487	regulatory region 604487	1723 bp proximal