rs52572267 SNP Detail

Summary

• ID
  rs52572267
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:85354879 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTAACACC ACATAAGCTA
  GGTGTGGGAG AACACTCCTT TATTCCTGGC ACTTCAGAGA TAGGAGACGG AGGATCAGAA
  GAGGTTATCC TTGGCTACAC ACTGAATGTA AGTCCAACCT AAGGTACAAG AGACCTTGTC
  TCCATAAAAA AAAAAAAATT GTTATTTGAA AAATACAGAA AAGAAAATAG AAAAAGCACC
  R
  GCCAGAAATC AACACTACTA GCAATTTGTC TTTCTAATCT TTACACTATA TCTGCATATA
  ATTTGAGGGC CCTAGAGAGT AAAGGTTAAA CCTGAGGGGT TTGACTCTAC TGTTTATGGT
  CTGTGTTAGC TCCTTTGCCC ACCCCCACCC CAGACAACCA CGTGACTGAG ATAAGTGCTT
  CTGCTGCCCT CTGGTCACTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60906838	NES15957571	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs52572267					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60906838	NES15957571	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:85354879 () rs orientation: forward

Symbol	Name	Function Class
4933423K11Rik	RIKEN cDNA 4933423K11 gene	43 bp downstream
Rr633196	regulatory region 633196	within coordinates