rs52572252 SNP Detail

Summary

• ID
  rs52572252
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:141234192 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAACACAGTT CCTAGCTTCT
  CAAACAAAAC TCAGCCACGG GCTCCAGGTT CTTTTCTCCA GGGGCAGAGC AAACCCCAGT
  AAGCTCAGCA TCTAAGCCCC AAACTGAAGA CCTATTCTTC TGGCCAGAAA ACCACCAAAA
  GACAGACAGA CAGACAGACA GACAGACAGA CAGTCAGACA GATGCACACA CACATACACA
  M
  ACACTTCTTT TAAGCGTTAC TAAAATTCTA GATTTGACAT CGTTTCTGGG AAACCAGCTA
  GGAATGCACC TGCCCCTGGC TCATCGAAGT TGGAACTGGG CTCCCATCTT TCCTGCCTTA
  ACTCACACCA CTCCCAGCCC AGCCATGCCC CACAGCCTTA AGACACAAGG TTGTGTGGCA
  AGCAAGGCCT GCAGTGGCCA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss147739713	ENSMUSSNP338417	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	C	A
ss321387743	CHEV_4_141062796	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs52572252					SNP	A	C	A	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141234192 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr603781	regulatory region 603781			within coordinates
Rr603782	regulatory region 603782			229 bp proximal
Rr603783	regulatory region 603783			502 bp proximal
Spen	spen family transcription repressor			Intron
				Noncoding-Transcript-Variant