rs52568863 SNP Detail

Summary

• ID
  rs52568863
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:156445031 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TTTCCTTTT GTTTGGTGCT AGAGGGTAGG
  ACCGGCAATG TTTTCTGTGG ATATCCTGTG CAGACAGATT GGACAGGAAC TTGTTGTACA
  AGAACAAAGG AGTgggaaga aggaggaagg aaggagggaa agaaggaagC TCTGTAAGAG
  Y
  CAGAGACAGG AGGGGCGGCC AGGCCAGGGA ACGGAAAGAC AGTCTCCTGG GCTTGGGTTC
  TGGGCCTTGT CTCTTAGGTA CTGCATTTAT CTTGTGTTTT TCACTTCATC TCAGGGGTAT
  GTACCAGTGG TTGGCTTTTA TTACATTTAT                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss145800305	ENSMUSSNP166777	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	T
ss320072531	CHEV_1_158547592	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs52568863					SNP	C	T	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:156445031 () rs orientation: forward

Symbol	Name	Function Class
Abl2	ABL proto-oncogene 2, non-receptor tyrosine kinase	Intron
Rr396425	regulatory region 396425	1553 bp downstream
Rr421203	regulatory region 421203	1048 bp distal
Rr421204	regulatory region 421204	1800 bp distal
Rr421205	regulatory region 421205	within coordinates
Tssr9572	transcription start site region 9572	1599 bp downstream
Tssr9573	transcription start site region 9573	1575 bp downstream
Tssr9574	transcription start site region 9574	1528 bp downstream