rs52567075 SNP Detail

Summary

• ID
  rs52567075
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:26692592 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    tttgaggtc agcctgggaa cactcatgta
  gtgagttctg agccagcctg aaacagagtg aaacAAGGTA GATATGTGGA TAGATAGATA
  GATGGGAGAG TGGACAGATG GGGacacaca cacacacaca cacacacaca cacacacaca
  Y
  TGTATAATTG TActtcctaa tactgggacc ctttaataca gttcctcatg tagtggtgac
  cccccccaca cacacacaca caataagaaa taataaatta cttttgttgc cactccatac
  ctgtaaattt tctactgcta tgaactgtac                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss134696940	ENSMUSSNP7093810	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
ss320687945	CHEV_3_26537365	CHEVERUD	SCREENING_POP	f	SNP			C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs52567075					SNP	T	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:26692592 () rs orientation: forward

Symbol	Name	Function Class
Gm65182	predicted gene, 65182	889 bp upstream
Gm65438	predicted gene, 65438	365 bp downstream
Rr574324	regulatory region 574324	770 bp proximal
Rr574325	regulatory region 574325	1004 bp proximal
Rr574326	regulatory region 574326	1713 bp proximal
Spata16	spermatogenesis associated 16	Intron
Tssr28597	transcription start site region 28597	806 bp downstream
Tssr28598	transcription start site region 28598	783 bp downstream