rs52567070 SNP Detail

Summary

• ID
  rs52567070
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:90616120 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGGGTAGAAG GTGACATCAG GATTATCAGA ATGCATATGC
  TGCCACCTTA TGGCCTGTCT ATGTCATGAC AGCTTCGGCA GTCTTTTGGA CTCTAATTTT
  W
  AAAATTTTAC ATTTAATTTT TTTAGCCTTA ATTAATTTAC TTTATTTTTG TTGTATATGC
  TCCTGTATGT GGTAGCCACA GTTGGAGACT GGGTTCTTT                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	MSM/Ms	PWD/PhJ	SM/J	WSB/EiJ
ss60423950	NES15930005	PERLEGEN	MM_PANEL2	f	SNP		T	A	T	T		T		T		T
ss135478737	ENSMUSSNP1209147	ENSEMBL	ENSEMBL_Sanger	f	SNP	A			T				T
ss320838621	CHEV_3_90512735	CHEVERUD	SCREENING_POP	f	SNP						A				T
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	MSM/Ms	PWD/PhJ	SM/J	WSB/EiJ
rs52567070					SNP	A	T	A	T	T	A	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60423950	NES15930005	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:90616120 () rs orientation: forward

Symbol	Name	Function Class
Gm42579	predicted gene 42579	68 bp downstream
Rr580435	regulatory region 580435	within coordinates
Rr580436	regulatory region 580436	43 bp distal
Rr580437	regulatory region 580437	896 bp proximal
Rr580438	regulatory region 580438	1155 bp proximal
Rr580439	regulatory region 580439	1416 bp proximal