rs52564852 SNP Detail

Summary

• ID
  rs52564852
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:137522743 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    AGTCCTTAT CCAGCATTTA ATAAACAGTT
  GCCCTAATTC TCAACCAGAC TGAGAATCTG AGGCTGCCTG AGGGGGGGTC TTTGAATTCT
  TCTTGGAGCC AAACGTTCTT TCAGGCCTGA GAATAATCCC TCTGTTATAt gtatgtgtgt
  R
  tgtgtgtgtg tgtgtgtgtg tgtgtgtgtg tgtgtgtgtg tgtgtgtgta tgAttttgag
  acctaatctt cctagagtgt tagagtggcc tcgaactcac agagatcctc agcctccaga
  ctgccagcat CTCTCCAGAG TTGCCGCGCC                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss147620210	ENSMUSSNP5288427	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
ss321367522	CHEV_4_137351347	CHEVERUD	SCREENING_POP	f	SNP			G	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs52564852					SNP	A	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:137522743 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Alpl	alkaline phosphatase, liver/bone/kidney			Intron
				Noncoding-Transcript-Variant
Rr602723	regulatory region 602723			587 bp distal
Rr602724	regulatory region 602724			within coordinates
Rr602725	regulatory region 602725			876 bp proximal
Rr602726	regulatory region 602726			942 bp proximal
Rr602727	regulatory region 602727			1011 bp proximal
Tssr1350	transcription start site region 1350			853 bp downstream
Tssr44149	transcription start site region 44149			876 bp downstream
Tssr44150	transcription start site region 44150			918 bp downstream