rs52564396 SNP Detail

Summary

• ID
  rs52564396
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:69691647 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAGGA CTACGCACGG AAACGCTGTC
  C
  CAAAAAAAAA AAAAGGAAAA AAGAG                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J	LG/J	SM/J
ss146730538	ENSMUSSNP5656313	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
ss320332353	CHEV_2_69699360	CHEVERUD	SCREENING_POP	f	SNP		C	C
SNP Consensus Information
SNP					Consensus Type	DBA/2J	LG/J	SM/J
rs52564396					SNP	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:69691647 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11719	CpG island 11719	within coordinates
Rr397021	regulatory region 397021	646 bp downstream
Rr397022	regulatory region 397022	59 bp upstream
Rr558483	regulatory region 558483	within coordinates
Rr558484	regulatory region 558484	270 bp proximal
Ssb	small RNA binding exonuclease protection factor La	316 bp upstream
Tssr18173	transcription start site region 18173	274 bp upstream
Tssr18174	transcription start site region 18174	282 bp upstream
Tssr18175	transcription start site region 18175	335 bp upstream
Tssr18176	transcription start site region 18176	872 bp upstream