rs52563988 SNP Detail

Summary

• ID
  rs52563988
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:119346350 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CACCCATATT TCCAATAAAT TATCTTTTTG CTTACAGTAG
  TTGAGTCAGT TCTTGGCTTA GGGGCACACA CACACACACA CACACACACA TACACACACA
  Y
  ACACACACAC ACACACACGA CACATTGATG CTCTCTACCT CTTTGCCCTG CCTCTCACCA
  TGTCTTGTGT TTGTCACCCC TCTTGACAGG GACATTCTC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss147334491	ENSMUSSNP4128525	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs52563988					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:119346350 () rs orientation: forward

Symbol	Name	Function Class
Exd1	exonuclease 3'-5' domain containing 1	636 bp downstream
Gm33412	predicted gene, 33412	within coordinates
Rr563519	regulatory region 563519	687 bp distal
Rr563520	regulatory region 563520	490 bp distal
Rr563521	regulatory region 563521	1021 bp proximal