rs52563801 SNP Detail

Summary

• ID
  rs52563801
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:41570565 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTAAATTAA TCTAGTGAGT
  ATATGGCCTC TCACCATTTT AGGAGGCACC AGATTCATTT GCACTATTAG GAATGCTAGT
  TTTGTGCAAA AATAAATGCC TTACCTGTTT CCCCCCACAT TTAGGTTGAA AAGCTTTCAA
  ATGTTCCAAG TTATGCTGAA CCAAAAACAA ATAAAACAAA ATGAAAAAAA AAAAAAAAAA
  A
  AATAATAAAA AATTTCCCCC ACAAAAACAT AACAAAAAAA AAAAAAGCCC ACACGTTTAA
  TTACTGCTTT GAAATGCAAT GGTATAGAGC ACGGTTTCTG ACAGTGTAAT GATAGCTTTG
  TAAGTTAGTT CATGTCATGC TGGGAACTCT GTATGAGGCG GCCACAGGCA GCAGCAGCCC
  ACCTACCTAC CCACTTGCAT                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J
ss135042484	ENSMUSSNP1737030	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
SNP Consensus Information
SNP					Consensus Type	A/J
rs52563801					SNP	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:41570565 () rs orientation: forward

Symbol	Name	Function Class
Jade1	jade family PHD finger 1	mRNA-UTR
Rr575994	regulatory region 575994	1133 bp proximal