rs52562808 SNP Detail

Summary

• ID
  rs52562808
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:52893181 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      G CCCCGCCTCC CTGTCTCCTC CCTGCTGGAG CCCCGCCTCC
  CTGTCTCCTC CCTGCTGGAG CCCCGCCTCC CTGTCTCCTC CCTGCTGGAG CCCCGCCTCC
  C
  TGTCTCCTCC CTGCTGGAGC CCCGCCTCCC TGCCACCTCA CTGCTGAAGC TCCAACCTCC
  TTGTCTTCTT ACTGCTGTAC TCTCTTACAC CAGGCAGCTG C                    
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J
ss135180542	ENSMUSSNP7165514	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
SNP Consensus Information
SNP					Consensus Type	DBA/2J
rs52562808					SNP	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:52893181 () rs orientation: forward

Symbol	Name	Function Class
Cog6	component of oligomeric golgi complex 6	Intron
Gm65168	predicted gene, 65168	within coordinates
Rr397670	regulatory region 397670	within coordinates
Rr576615	regulatory region 576615	1449 bp distal
Rr576616	regulatory region 576616	within coordinates