rs52562159 SNP Detail

Summary

• ID
  rs52562159
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:133222743 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTCCCAGAG CCTCTACTAG
  GATCAACCAT GTTATTGTGT CAGAGCCTAT TTCAAACCTT ACAAGTGCAT TTTCTTTCCT
  TTCTTCCTTT TTCTTATGTA TGGGAGGTGT GTGTGCACGT GCGTGTGTGT GTGTGTGTGT
  GTGTGTGTGT GTGTATGTGT GTGTGTGTGT ATATACACAT CAACCTTCAT TGCTCTCCAT
  R
  CAGTGAAGCA GGATCTCCCA CTGAACCAGC AGCTCTGCAA ATCTAGCTAG CCAGCTTGCC
  CTGAGGATCC CTGCGTCTCC GGTGCTGGAA TTCCAGGAAG CTTCTAGCTT TTATATGGAT
  TTGGGGAGTC CTCCCACTTG TGCAGTAAGC ATTTCATCCA CCAAGCCATG TCTCCAGCCA
  AAGCAGGCCT TTAACAAAGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss135918700	ENSMUSSNP1594573	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs52562159					SNP	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:133222743 () rs orientation: forward

Symbol	Name	Function Class
Rr585556	regulatory region 585556	459 bp distal
Rr585557	regulatory region 585557	500 bp proximal
Rr585558	regulatory region 585558	1882 bp proximal
Tet2	tet methylcytosine dioxygenase 2	Intron
Tssr35763	transcription start site region 35763	1790 bp downstream