rs52560918 SNP Detail

Summary

• ID
  rs52560918
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:119819046 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCTCATGGGA TGATACTGGC AGATAACCAG TTAAAGACCC
  TCTCCCCAGG AGTCTAATCT CCTCTCCTCT CTTCTCCCCT TTTGTCTTTC CCCCTCCTTT
  C
  CTTTCCCTCT CCCCCCTCCT ACAGACAGAC AGACACATAC ACACACACAC ATACACACAC
  ACACCACCTT GTTTCCATGT CCAGGTTAAC AGATCTCTG                       
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147339524	ENSMUSSNP1943165	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs52560918					SNP	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:119819046 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Hivep3	human immunodeficiency virus type I enhancer binding protein 3			Intron
				Noncoding-Transcript-Variant
Rr598692	regulatory region 598692			1839 bp distal
Rr598693	regulatory region 598693			282 bp proximal
Rr598694	regulatory region 598694			399 bp proximal
Tssr43140	transcription start site region 43140			684 bp downstream