rs52560447 SNP Detail

Summary

• ID
  rs52560447
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:95877635 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTTTT GTTGCATGTA TGTATGTATG
  Y
  ATGCATGCAT GCATGTATGT GTGTG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss135513284	ENSMUSSNP5649511	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	C
ss320841287	CHEV_3_95774246	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs52560447					SNP	T	T	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:95877635 () rs orientation: forward

Symbol	Name	Function Class
Rr397846	regulatory region 397846	1858 bp upstream
Rr581108	regulatory region 581108	1642 bp distal
Rr581109	regulatory region 581109	384 bp proximal
Rr581110	regulatory region 581110	1778 bp proximal