rs52560348 SNP Detail

Summary

• ID
  rs52560348
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:116763045 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      A AACAAAACAA AAAAACCCAA AGGTGTTAAC GTGATGATTG
  ATGTTGGATA TCTGGGGACT GCAGCACCTT TTTTGGACCC CATTCAAAAA AAACAAAAAA
  M
  AAAAAACAAA AAACAAAACA AAACAAAACA AAAAAACAAA CCCCGACAAT CTTCAATTTC
  AGGAAGGTGC CCATTTTGAC AGCCTGAAGT TATGCAAGAG C                    
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss135676647	ENSMUSSNP3821837	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs52560348					SNP	A	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:116763045 () rs orientation: forward

Symbol	Name	Function Class
4930455H04Rik	RIKEN cDNA 4930455H04 gene	Intron
Cpgi13743	CpG island 13743	526 bp distal
Gm52613	predicted gene, 52613	1383 bp downstream
Palmd	palmdelphin	409 bp upstream
Rr583817	regulatory region 583817	1119 bp distal
Rr583818	regulatory region 583818	78 bp distal
Tssr35360	transcription start site region 35360	845 bp upstream
Tssr35361	transcription start site region 35361	828 bp upstream
Tssr35362	transcription start site region 35362	763 bp upstream
Tssr35363	transcription start site region 35363	704 bp upstream
Tssr35364	transcription start site region 35364	628 bp upstream
Tssr35365	transcription start site region 35365	607 bp upstream
Tssr35366	transcription start site region 35366	581 bp upstream
Tssr35367	transcription start site region 35367	562 bp upstream
Tssr35368	transcription start site region 35368	458 bp upstream
Tssr35369	transcription start site region 35369	392 bp upstream
Tssr35370	transcription start site region 35370	369 bp upstream
Tssr35371	transcription start site region 35371	118 bp downstream