rs52559947 SNP Detail

Summary

• ID
  rs52559947
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:166494175 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCGCTCTTCT GACTCCACAC ATGGGGGGAG GGGGGAGGGA
  GAGAAGGGGG AGGAGGAAGA GGAAGAGGAG GGAGGGGGAA AGGAAGAGGA GGAGGAGGGA
  G
  AGGAGGAAGA AGAAGTTCGT AGGCTCTCAA TGGTTCACAC ACCAAGGCCT CCGATTACAA
  GGGAGGCATT CCTGTCTGTC CATTCTACAG ATGAGGTAG                       
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J
ss148257577	ENSMUSSNP4240323	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
SNP Consensus Information
SNP					Consensus Type	DBA/2J
rs52559947					SNP	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:166494175 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Prex1	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1			Intron
				Noncoding-Transcript-Variant
Rr570327	regulatory region 570327			1408 bp distal
Rr570328	regulatory region 570328			133 bp distal
Rr570329	regulatory region 570329			721 bp distal
Rr570330	regulatory region 570330			528 bp proximal
Rr570331	regulatory region 570331			1147 bp proximal