rs52557986 SNP Detail

Summary

• ID
  rs52557986
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:147978569 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTGTTCTAT TTAAAACTGA
  GCTGGCACAA CTAGAGTTCA TTATATGATG GTTTTGGTAG CCTGACATAG TGGAAACTCA
  ATAGAAGTAG AAACTATTTT ATAAACCTTA TATTATTTTT TAATTTAGGT TGGTTCTTTC
  TACATTTTAA TTTACTTGTA ATTCATTCTT TATACTCCAT ATTCCATTCC CAGCTCACCC
  Y
  ATCCACCCTG CAAATGCTCC TCCACCTCCC ACACCTCCTC CCCACCCCAT TCTGTCTCCA
  CTTGAATGCC CCCATCCCCC AGCACACCTG ACCTCTAAAC TCCCTGGAGC CTCCAGTCTC
  TTGAGGGTTA GGTGCATCAT CTCTGAATGA ACACAGACCT GGAAGTCCTC TAGTGGATAT
  GTGTTGGGGG CCTCATATCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss136057914	ENSMUSSNP2951360	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	T
ss321014841	CHEV_3_147935897	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs52557986					SNP	C	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:147978569 () rs orientation: forward

Symbol	Name	Function Class
Rr375892	regulatory region 375892	1030 bp upstream
Rr587183	regulatory region 587183	467 bp distal
Rr587184	regulatory region 587184	165 bp distal