rs52557470 SNP Detail

Summary

• ID
  rs52557470
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:97982525 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAAATATAT CTAGACCCTT
  CCTAGACAAG TTGTAAATAC ACAGTGACTC CTAAGAATTG TGACATGAAC ACGTTCTAGA
  AGATGCTGAC AGAACCTGAC TCCACATTCT GGAAAAACAA AACAAAACAA ACCAACACTA
  CCAACAACAA CAAAAACAAC AAAAAAAAAT CATTCTCCTG AGTTAGGCAA AGGCCATGTA
  W
  ACAGATCCAG AAATATTCCC TGCCAGTTTC CATGTCACTG CATTACAAAG GCATACAATA
  CTGGAAAGTT ATTTGTCCTG AAAATAAAGT TTGACTCTTA ATAATAGAAT ATGCCATCAA
  GGGCTGGAGA GTGTTTAAGA ACACCCACAC AGTGGCTCTC AACTATCTGT GGCTCAAGTC
  TCTGGGATCT GATGCCCTCT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60914479	NES16220868	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	T	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs52557470					SNP	A	A	A	A	T	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60914479	NES16220868	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:97982525 () rs orientation: forward

Symbol	Name	Function Class
Mitf	melanogenesis associated transcription factor	Intron
Rr635255	regulatory region 635255	118 bp proximal
Rr635256	regulatory region 635256	189 bp proximal
Tssr57947	transcription start site region 57947	783 bp downstream
Tssr57948	transcription start site region 57948	475 bp downstream