rs52556330 SNP Detail

Summary

• ID
  rs52556330
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:83994384 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      A CACAGAGAAA CCCTGTCTCG AAAAACCAAA AAAAAAAAAA
  AAAAAAAAAA AACAAAAAAC AAACAAAAAA AAACAGCAAT CCACAGCAAT TCTGCTATGA
  A
  AAAACTGGCT GCCAAGGGAG AGGAGCATAG TCAGAGAGAG TAAGAGAAGG TCCTAGCAGC
  CAAAGAAGGT TCTGGATTCT CCTTCCTACT TGTCTTTCAC C                    
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ
ss133350689	ENSMUSSNP6268816	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ
rs52556330					SNP	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:83994384 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17623	CpG island 17623	1543 bp proximal
Dysf	dysferlin	Intron
Rr632974	regulatory region 632974	1690 bp distal
Rr632975	regulatory region 632975	74 bp proximal
Rr632976	regulatory region 632976	186 bp proximal
Rr632977	regulatory region 632977	1519 bp proximal
Rr632978	regulatory region 632978	1631 bp proximal
Tssr1912	transcription start site region 1912	1992 bp upstream
Tssr57398	transcription start site region 57398	1944 bp upstream
Tssr57399	transcription start site region 57399	1962 bp upstream