rs52556054 SNP Detail

Summary

• ID
  rs52556054
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:33690920 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      T CCTCAGGCTT CACCCTTCCC TGGGAAATCA AGTCTCTACA
  GGACTAGGTA CATCATCTCT CACTGAGGCC AGATAAGACA GTCCTCTGCT ACATGTGTGC
  Y
  TGGGGGCAGG GGTGGGGGTG GAGGTAGACA TGGTAGGGGG TGGAGGTAGG CCCATGTTTC
  ATGTATGCTC TTTGGTTGGT GGCTTAGTCT CTGGGAGCTG A                    
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss133107914	ENSMUSSNP776339	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs52556054					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:33690920 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Exoc4	exocyst complex component 4			Intron
				Noncoding-Transcript-Variant
Rr628208	regulatory region 628208			1752 bp distal
Rr628209	regulatory region 628209			890 bp distal