rs52554904 SNP Detail

Summary

• ID
  rs52554904
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:147514765 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      A ATAACTGATA TAAGGTAAGC AAATCGAAGG CATATCAGTG
  TAGTGCCACA CACCTCTAAT GTCCATCTTT AAGAAGTAGA GGCAGAAACA TCAGGTTATT
  C
  ATTGGCAGCC TGAGCCAAAG ACAATCTCAA AATAAATGAC TAAATTAGTT AATCAATAAA
  AACTAAAATA AATAAATTAT AAATATGGTT AATCTAAGTT C                    
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J
ss147959696	ENSMUSSNP4261024	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
SNP Consensus Information
SNP					Consensus Type	A/J
rs52554904					SNP	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:147514765 () rs orientation: forward

Symbol	Name	Function Class
Rr398814	regulatory region 398814	1238 bp downstream
Rr398815	regulatory region 398815	797 bp downstream
Rr398816	regulatory region 398816	within coordinates
Rr398817	regulatory region 398817	681 bp upstream
Rr604487	regulatory region 604487	1847 bp proximal