rs52551755 SNP Detail

Summary

• ID
  rs52551755
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:133222659 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      A CTAGGATCAA CCATGTTATT GTGTCAGAGC CTATTTCAAA
  CCTTACAAGT GCATTTTCTT TCCTTTCTTC CTTTTTCTTA TGTATGGGAG GTGTGTGTGC
  R
  CGTGCGTGTG TGTGTGTGTG TGTGTGTGTG TGTGTGTATG TGTGTGTGTG TGTATATACA
  CATCAACCTT CATTGCTCTC CATGCAGTGA AGCAGGATCT C                    
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss135918694	ENSMUSSNP5167142	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs52551755					SNP	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:133222659 () rs orientation: forward

Symbol	Name	Function Class
Rr585556	regulatory region 585556	375 bp distal
Rr585557	regulatory region 585557	584 bp proximal
Rr585558	regulatory region 585558	1966 bp proximal
Tet2	tet methylcytosine dioxygenase 2	Intron
Tssr35763	transcription start site region 35763	1874 bp downstream