rs52551357 SNP Detail

Summary

• ID
  rs52551357
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:154494462 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGTCCAAGTC AAGAGGAAGA GTATGGAAGA GGAAGAAGAG
  AAGGGGAAGG GGAAGGGGAG GAGGAGGAGG GAATGAGAAG GGAAGGGGGT GCATGGAGAG
  R
  ATGGGAGAGT AAGGAAGGGT AGGGGAGAAA CGAGAAATAT TCAACTGAAG GGTTGCTTTT
  GATCACATGT CATTACCAGG CCTAGGGCAC CCTCTTTTT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss145765794	ENSMUSSNP4283369	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs52551357					SNP	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:154494462 () rs orientation: forward

Symbol	Name	Function Class
Cacna1e	calcium channel, voltage-dependent, R type, alpha 1E subunit	Intron
Rr396402	regulatory region 396402	891 bp downstream
Rr420845	regulatory region 420845	684 bp distal
Rr420846	regulatory region 420846	266 bp proximal