rs52546279 SNP Detail

Summary

• ID
  rs52546279
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:150277920 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTATCTGTA TAAATAAATA
  TTTAAAATAA ACAAATAAAG TGACTTCCAG AACCTAGAGA GATGGCTCAG TGGTTAAGAG
  CATATAATAC CCTGAGTAGT GGTGGCACAT GCCTTTAATC CCAGCACTTG GGAGGCAGAG
  ACAGGTGGAT TTCTGAGTTC AAGGCCAGCC TGGTCTACAG AGAGAGTTCC AGAACAGCCA
  R
  GGCTACACAG AGAAACCCTG TCTCAAAAAA TAAAAAAATA AAGACAAACA CCATACACCT
  TAATGACTTA AAAATCCATA CTTAGGAGCT GGAGAGAGGA CAGTGCACAA GAACTTATGC
  ATGGTTTCTC AGAGGTATGC TTCCCTCCTA AGCCGTAGAA GAAAGAGTCA AAGAGACCTG
  GCTTCCCTCG GGAGGGCTGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss148049892	ENSMUSSNP788756	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs52546279					SNP	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:150277920 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Car6	carbonic anhydrase 6			Intron
				Noncoding-Transcript-Variant
Rr605219	regulatory region 605219			559 bp proximal
Rr605220	regulatory region 605220			649 bp proximal
Tssr44724	transcription start site region 44724			947 bp upstream
Tssr44725	transcription start site region 44725			905 bp upstream
Tssr44726	transcription start site region 44726			878 bp upstream
Tssr44727	transcription start site region 44727			830 bp upstream
Tssr44728	transcription start site region 44728			295 bp downstream