rs52544314 SNP Detail

Summary

• ID
  rs52544314
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:148251290 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGCTGCGTTG TTCCTATCCC TCTCTGGAGC AGTTTGGCAG
  TGACGCCACC AGGTCTGGAT AGCATTCTCT TGGGCTTAGA GATGAAGGCT GTGGAGTGGC
  R
  CGCGCACACA CACACACACA CACACACACG CACACACACG CACACGCGCA CGCGCACACG
  CGCGCGCGCA CACACACACG CGCGCGCGCA CACACACAC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	LG/J	SM/J
ss147994786	ENSMUSSNP870076	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
ss321417764	CHEV_4_147540942	CHEVERUD	SCREENING_POP	f	SNP		A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	LG/J	SM/J
rs52544314					SNP	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148251290 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15296	CpG island 15296	1749 bp distal
Cpgi15297	CpG island 15297	within coordinates
Fbxo2	F-box protein 2	409 bp downstream
Gm68449	predicted gene, 68449	within coordinates
Rr604611	regulatory region 604611	414 bp proximal
Rr604612	regulatory region 604612	1387 bp proximal
Rr604613	regulatory region 604613	1419 bp proximal
Rr604614	regulatory region 604614	1644 bp proximal
Tssr44601	transcription start site region 44601	460 bp upstream