rs52543637 SNP Detail

Summary

• ID
  rs52543637
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:135391063 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCTGAAACC CTATAGGTGG
  AACAACAATG TGAACTAACC AGTACCTCTC GTGTCTCTAG CTGCATATGT AGCAGAACAT
  GGCCTAGTCG GCCATCATTG GGAAGAGAGG CCCCTTGGTC TTGCAAACTT TATATGTCCC
  AGTACAGAGG AACGCCAGGG CCAAGAAGTG GGGTTTGGTG GGGAAGGGAG CAGGGTGGGG
  C
  GAGGGCATAG GGATAGCATT TGAAATGTAA ATGAAGAAAA TACCTAATAA AAAATGGAAA
  TGAAAAAAAA CCCACGAGGT AGAAATTTGT ATTAACATAT CTGGAAGAGT CACTATCTCA
  GTCCTAAATT TCCTGTCTTT GAGGACATAT TTTCTAAAAC AATTCAGCCA TTTATTTTTC
  TATTAGAATG AGCTGTGGGC                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

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SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss135928488	ENSMUSSNP3414721	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs52543637					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:135391063 () rs orientation: forward

Symbol	Name	Function Class
Nfkb1	nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105	Intron
Rr585765	regulatory region 585765	1172 bp proximal